species:   Opsin
pid:       PID1934
parent:    n_os_milR_54
paralog:   
locus:     JAAVMX010000004.1:548920-549062
matures:   ['AUACAAAUUUGGUGGCGCUAAGACC', 'UCUCAGCGCCACCAAAUUUGUAUAC']
srr:       SRR12952906
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952906.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952906.cram JAAVMX010000004.1:548920-549062

0 out of bounds
20 alignments
0 proper strand
0 stranded perfect matches

       ***************************                                                                            ***************************      
CCCCAUAGGUCUCAGCGCCACCAAAUUUGUAUACGCAAUGUAUCUGCCCGCACCCGCCCGAGCAAUUUUUCAAGGGGCAUGGCUCGGGCGGGUGCGGGCAGAUACAUAACGUAUACAAAUUUGGUGGCGCUAAGACCUGGGGG
((((.(((((((.((((((((((((((((((((((..((((((((((((((((((((((((((..................))))))))))))))))))))))))))..)))))))))))))))))))))).)))))))))))
----------------------------------------------------------------------------------------------------------------AUACAAAUUUGGUGGCGCUAAGACC------ l=25 a=0 c
---------UCUCAGCGCCACCAAAUUUGUAUAC------------------------------------------------------------------------------------------------------------- l=25 a=0 c*
----------------------------------------------------------------------------------------------------------------AUACAAAUUUGGUGGCGCUAAGACC------ l=25 a=0 ma
---------UCUCAGCGCCACCAAAUUUGUAUAC------------------------------------------------------------------------------------------------------------- l=25 a=0 ma*


No alignments to locus

mb-01011
ax-1011001
ku-01
ss-100011011100
fn-001
